STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000421185_02327Unannotated protein; Belongs to the purine-cytosine permease (2.A.39) family. (515 aa)    
Predicted Functional Partners:
GCA_000421185_02326
Unannotated protein.
 
     0.959
pyrB
Unannotated protein; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
   
    0.731
GCA_000421185_01590
Unannotated protein.
 
     0.724
GCA_000421185_02323
Unannotated protein.
 
     0.674
GCA_000421185_02324
Unannotated protein.
       0.576
GCA_000421185_02325
Unannotated protein.
       0.576
GCA_000421185_02328
Unannotated protein.
       0.555
carA
Unannotated protein; Belongs to the CarA family.
   
    0.524
GCA_000421185_00559
Unannotated protein.
  
    0.512
GCA_000421185_02329
Unannotated protein.
       0.449
Your Current Organism:
Ornithinimicrobium pekingense
NCBI taxonomy Id: 1122622
Other names: O. pekingense DSM 21552, Ornithinimicrobium pekingense DSM 21552, Ornithinimicrobium pekingense LW6, Ornithinimicrobium pekingense str. DSM 21552, Ornithinimicrobium pekingense strain DSM 21552
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.