STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000421185_03276Unannotated protein. (261 aa)    
Predicted Functional Partners:
GCA_000421185_03274
Unannotated protein.
       0.773
GCA_000421185_03275
Unannotated protein.
       0.773
GCA_000421185_02146
Unannotated protein.
    
  0.768
GCA_000421185_01024
Unannotated protein.
  
 
 0.757
GCA_000421185_02106
Unannotated protein.
  
 
  0.643
GCA_000421185_02518
Unannotated protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.623
GCA_000421185_01446
Unannotated protein.
  
 
  0.583
GCA_000421185_01090
Unannotated protein.
    
  0.533
GCA_000421185_03273
Unannotated protein.
       0.520
GCA_000421185_00607
Unannotated protein.
  
  
  0.510
Your Current Organism:
Ornithinimicrobium pekingense
NCBI taxonomy Id: 1122622
Other names: O. pekingense DSM 21552, Ornithinimicrobium pekingense DSM 21552, Ornithinimicrobium pekingense LW6, Ornithinimicrobium pekingense str. DSM 21552, Ornithinimicrobium pekingense strain DSM 21552
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.