STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000422445_00291Unannotated protein. (307 aa)    
Predicted Functional Partners:
GCA_000422445_01933
Unannotated protein.
  
 0.856
GCA_000422445_02845
Unannotated protein.
  
  
  0.785
GCA_000422445_00292
Unannotated protein.
       0.774
GCA_000422445_00293
Unannotated protein.
       0.710
GCA_000422445_02907
Unannotated protein.
  
 0.661
GCA_000422445_00294
Unannotated protein.
       0.599
GCA_000422445_00789
Unannotated protein.
   
 
 0.591
GCA_000422445_02908
Unannotated protein.
  
  0.566
GCA_000422445_00410
Unannotated protein.
   
  0.449
GCA_000422445_02906
Unannotated protein.
   
  0.449
Your Current Organism:
Paenibacillus assamensis
NCBI taxonomy Id: 1122916
Other names: P. assamensis DSM 18201, Paenibacillus assamensis DSM 18201
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.