STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC86551.1Phosphoribosyl 1,2-cyclic phosphodiesterase. (263 aa)    
Predicted Functional Partners:
rlmH
23S rRNA (pseudouridine1915-N3)-methyltransferase; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.
 
     0.821
SMC86498.1
Phosphoglucomutase.
 
     0.635
SMC86576.1
Two-component signal transduction system YycFG, regulatory protein YycI.
  
  
 0.627
SMC70203.1
alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL.
  
  
 0.602
SMC70150.1
alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase.
  
 
 0.569
SMC86503.1
Hypothetical protein.
       0.563
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
       0.543
SMC70191.1
alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase.
  
  
 0.527
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
     
 0.417
Your Current Organism:
Papillibacter cinnamivorans
NCBI taxonomy Id: 1122930
Other names: P. cinnamivorans DSM 12816, Papillibacter cinnamivorans DSM 12816
Server load: low (10%) [HD]