STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC90288.1Zinc-ribbon family protein. (123 aa)    
Predicted Functional Partners:
SMC90311.1
Sporulation and spore germination.
  
     0.694
SMC90145.1
Protein of unknown function.
       0.586
SMC90157.1
Energy-coupling factor transport system permease protein.
       0.586
SMC90228.1
Energy-coupling factor transport system ATP-binding protein.
       0.586
SMC90277.1
Energy-coupling factor transport system substrate-specific component.
       0.586
SMC66394.1
Protein of unknown function.
  
     0.578
SMC90129.1
Prenyltransferase, beta subunit.
       0.513
SMC63899.1
Hypothetical protein.
  
     0.491
SMC76151.1
Uncharacterized protein, PH0010 family/AmmeMemoRadiSam system protein A/AmmeMemoRadiSam system protein B.
 
     0.458
Your Current Organism:
Papillibacter cinnamivorans
NCBI taxonomy Id: 1122930
Other names: P. cinnamivorans DSM 12816, Papillibacter cinnamivorans DSM 12816
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.