STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC91455.1Pyruvate ferredoxin oxidoreductase alpha subunit. (393 aa)    
Predicted Functional Partners:
SMC91427.1
Pyruvate ferredoxin oxidoreductase beta subunit.
 0.998
SMC90076.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
 
0.997
SMC91491.1
Pyruvate ferredoxin oxidoreductase gamma subunit.
 
 0.996
SMC91477.1
Pyruvate ferredoxin oxidoreductase delta subunit.
 
 0.995
SMC87553.1
2-oxoglutarate ferredoxin oxidoreductase subunit beta.
  
 0.945
SMC87549.1
2-oxoglutarate ferredoxin oxidoreductase subunit gamma.
  
 0.917
SMC87579.1
Phosphate acetyltransferase.
    
 0.845
ldh
Malate dehydrogenase (NAD); Catalyzes the conversion of lactate to pyruvate.
  
 
 0.824
pckG
Phosphoenolpyruvate carboxykinase (GTP); Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle; Belongs to the phosphoenolpyruvate carboxykinase [GTP] family.
   
 
 0.816
SMC64972.1
Threonine dehydratase.
    
 0.800
Your Current Organism:
Papillibacter cinnamivorans
NCBI taxonomy Id: 1122930
Other names: P. cinnamivorans DSM 12816, Papillibacter cinnamivorans DSM 12816
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