Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SMC35554.1 | SMC35565.1 | SAMN02745168_0415 | SAMN02745168_0416 | Flagellar hook-associated protein 3. | Hypothetical protein. | 0.559 |
| SMC35554.1 | csrA | SAMN02745168_0415 | SAMN02745168_0418 | Flagellar hook-associated protein 3. | Carbon storage regulator, CsrA; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | 0.825 |
| SMC35554.1 | flgK | SAMN02745168_0415 | SAMN02745168_0414 | Flagellar hook-associated protein 3. | Flagella basal body rod protein. | 0.997 |
| SMC35554.1 | fliW | SAMN02745168_0415 | SAMN02745168_0417 | Flagellar hook-associated protein 3. | Flagellar assembly factor FliW; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum. | 0.988 |
| SMC35565.1 | SMC35554.1 | SAMN02745168_0416 | SAMN02745168_0415 | Hypothetical protein. | Flagellar hook-associated protein 3. | 0.559 |
| SMC35565.1 | csrA | SAMN02745168_0416 | SAMN02745168_0418 | Hypothetical protein. | Carbon storage regulator, CsrA; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | 0.481 |
| SMC35565.1 | flgK | SAMN02745168_0416 | SAMN02745168_0414 | Hypothetical protein. | Flagella basal body rod protein. | 0.460 |
| SMC35565.1 | fliW | SAMN02745168_0416 | SAMN02745168_0417 | Hypothetical protein. | Flagellar assembly factor FliW; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum. | 0.481 |
| csrA | SMC35554.1 | SAMN02745168_0418 | SAMN02745168_0415 | Carbon storage regulator, CsrA; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | Flagellar hook-associated protein 3. | 0.825 |
| csrA | SMC35565.1 | SAMN02745168_0418 | SAMN02745168_0416 | Carbon storage regulator, CsrA; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | Hypothetical protein. | 0.481 |
| csrA | flgK | SAMN02745168_0418 | SAMN02745168_0414 | Carbon storage regulator, CsrA; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | Flagella basal body rod protein. | 0.777 |
| csrA | fliW | SAMN02745168_0418 | SAMN02745168_0417 | Carbon storage regulator, CsrA; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | Flagellar assembly factor FliW; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum. | 0.999 |
| flgK | SMC35554.1 | SAMN02745168_0414 | SAMN02745168_0415 | Flagella basal body rod protein. | Flagellar hook-associated protein 3. | 0.997 |
| flgK | SMC35565.1 | SAMN02745168_0414 | SAMN02745168_0416 | Flagella basal body rod protein. | Hypothetical protein. | 0.460 |
| flgK | csrA | SAMN02745168_0414 | SAMN02745168_0418 | Flagella basal body rod protein. | Carbon storage regulator, CsrA; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | 0.777 |
| flgK | fliW | SAMN02745168_0414 | SAMN02745168_0417 | Flagella basal body rod protein. | Flagellar assembly factor FliW; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum. | 0.901 |
| fliW | SMC35554.1 | SAMN02745168_0417 | SAMN02745168_0415 | Flagellar assembly factor FliW; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum. | Flagellar hook-associated protein 3. | 0.988 |
| fliW | SMC35565.1 | SAMN02745168_0417 | SAMN02745168_0416 | Flagellar assembly factor FliW; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum. | Hypothetical protein. | 0.481 |
| fliW | csrA | SAMN02745168_0417 | SAMN02745168_0418 | Flagellar assembly factor FliW; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum. | Carbon storage regulator, CsrA; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | 0.999 |
| fliW | flgK | SAMN02745168_0417 | SAMN02745168_0414 | Flagellar assembly factor FliW; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum. | Flagella basal body rod protein. | 0.901 |