Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SMC40135.1 | SMC40165.1 | SAMN02745168_0700 | SAMN02745168_0701 | YbbR domain-containing protein. | Positive regulator of sigma(E), RseC/MucC. | 0.550 |
SMC40135.1 | SMC40190.1 | SAMN02745168_0700 | SAMN02745168_0702 | YbbR domain-containing protein. | Hypothetical protein. | 0.559 |
SMC40135.1 | SMC40199.1 | SAMN02745168_0700 | SAMN02745168_0703 | YbbR domain-containing protein. | Tetratricopeptide repeat-containing protein. | 0.403 |
SMC40135.1 | SMC40207.1 | SAMN02745168_0700 | SAMN02745168_0704 | YbbR domain-containing protein. | Hypothetical protein. | 0.622 |
SMC40135.1 | dacA | SAMN02745168_0700 | SAMN02745168_0699 | YbbR domain-containing protein. | Diadenylate cyclase; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria. | 0.973 |
SMC40165.1 | SMC40135.1 | SAMN02745168_0701 | SAMN02745168_0700 | Positive regulator of sigma(E), RseC/MucC. | YbbR domain-containing protein. | 0.550 |
SMC40165.1 | SMC40190.1 | SAMN02745168_0701 | SAMN02745168_0702 | Positive regulator of sigma(E), RseC/MucC. | Hypothetical protein. | 0.588 |
SMC40165.1 | SMC40199.1 | SAMN02745168_0701 | SAMN02745168_0703 | Positive regulator of sigma(E), RseC/MucC. | Tetratricopeptide repeat-containing protein. | 0.552 |
SMC40165.1 | SMC40207.1 | SAMN02745168_0701 | SAMN02745168_0704 | Positive regulator of sigma(E), RseC/MucC. | Hypothetical protein. | 0.525 |
SMC40165.1 | SMC40219.1 | SAMN02745168_0701 | SAMN02745168_0705 | Positive regulator of sigma(E), RseC/MucC. | TIGR00255 family protein. | 0.404 |
SMC40165.1 | dacA | SAMN02745168_0701 | SAMN02745168_0699 | Positive regulator of sigma(E), RseC/MucC. | Diadenylate cyclase; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria. | 0.550 |
SMC40190.1 | SMC40135.1 | SAMN02745168_0702 | SAMN02745168_0700 | Hypothetical protein. | YbbR domain-containing protein. | 0.559 |
SMC40190.1 | SMC40165.1 | SAMN02745168_0702 | SAMN02745168_0701 | Hypothetical protein. | Positive regulator of sigma(E), RseC/MucC. | 0.588 |
SMC40190.1 | SMC40199.1 | SAMN02745168_0702 | SAMN02745168_0703 | Hypothetical protein. | Tetratricopeptide repeat-containing protein. | 0.951 |
SMC40190.1 | SMC40207.1 | SAMN02745168_0702 | SAMN02745168_0704 | Hypothetical protein. | Hypothetical protein. | 0.937 |
SMC40190.1 | SMC40219.1 | SAMN02745168_0702 | SAMN02745168_0705 | Hypothetical protein. | TIGR00255 family protein. | 0.507 |
SMC40190.1 | dacA | SAMN02745168_0702 | SAMN02745168_0699 | Hypothetical protein. | Diadenylate cyclase; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria. | 0.437 |
SMC40199.1 | SMC40135.1 | SAMN02745168_0703 | SAMN02745168_0700 | Tetratricopeptide repeat-containing protein. | YbbR domain-containing protein. | 0.403 |
SMC40199.1 | SMC40165.1 | SAMN02745168_0703 | SAMN02745168_0701 | Tetratricopeptide repeat-containing protein. | Positive regulator of sigma(E), RseC/MucC. | 0.552 |
SMC40199.1 | SMC40190.1 | SAMN02745168_0703 | SAMN02745168_0702 | Tetratricopeptide repeat-containing protein. | Hypothetical protein. | 0.951 |
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