STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC41101.1Phage terminase, large subunit, PBSX family. (486 aa)    
Predicted Functional Partners:
SMC41082.1
Hypothetical protein.
       0.778
SMC41093.1
Hypothetical protein.
       0.773
SMC41071.1
Hypothetical protein.
       0.586
SMC41053.1
Chitobiase/beta-hexosaminidase C-terminal domain-containing protein.
       0.568
SMC42625.1
Uncharacterized SPBc2 prophage-derived protein YoqJ.
  
     0.540
SMC47994.1
S-layer homology domain-containing protein.
  
     0.490
SMC59789.1
S-layer homology domain-containing protein.
  
     0.486
SMC81820.1
Uncharacterized SPBc2 prophage-derived protein YoqJ.
  
     0.471
SMC40875.1
MerR HTH family regulatory protein.
  
     0.459
SMC81782.1
Uncharacterized SPBc2 prophage-derived protein YoqJ.
  
     0.457
Your Current Organism:
Papillibacter cinnamivorans
NCBI taxonomy Id: 1122930
Other names: P. cinnamivorans DSM 12816, Papillibacter cinnamivorans DSM 12816
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