STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC46852.1Carboxyl-terminal processing protease; Belongs to the peptidase S41A family. (408 aa)    
Predicted Functional Partners:
SMC46859.1
Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain.
 
 
 
 0.789
SMC46869.1
Cell division transport system permease protein; Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation. Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
       0.621
ftsE
Cell division transport system ATP-binding protein; Part of the ABC transporter FtsEX involved in cellular division.
       0.621
SMC90076.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
   0.607
SMC37081.1
Regulator of sigma E protease.
 
  
 0.588
secD
Preprotein translocase subunit SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.
 
 
  0.571
SMC86752.1
Copper amine oxidase N-terminal domain-containing protein.
   
   0.535
SMC36116.1
S-layer homology domain-containing protein.
   
   0.535
SMC37517.1
Protein of unknown function.
   
   0.535
SMC49247.1
Conserved repeat domain-containing protein.
   
   0.535
Your Current Organism:
Papillibacter cinnamivorans
NCBI taxonomy Id: 1122930
Other names: P. cinnamivorans DSM 12816, Papillibacter cinnamivorans DSM 12816
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