STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC47334.1Regulatory protein, luxR family. (468 aa)    
Predicted Functional Partners:
SMC38022.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.931
SMC70068.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.827
SMC70038.1
PAS domain S-box-containing protein.
   
 0.766
SMC35792.1
Flagellar motor switch protein FliN/FliY.
  
 
 0.740
SMC76167.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
 0.700
SMC34169.1
Histidine kinase.
  
 0.688
SMC34653.1
Signal transduction histidine kinase.
  
 0.688
SMC63522.1
Hypothetical protein.
  
 0.688
SMC80749.1
Glycosyltransferase involved in cell wall bisynthesis.
    
 0.660
SMC48258.1
Hypothetical protein.
    
 0.580
Your Current Organism:
Papillibacter cinnamivorans
NCBI taxonomy Id: 1122930
Other names: P. cinnamivorans DSM 12816, Papillibacter cinnamivorans DSM 12816
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