Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SMC35515.1 | SMC48258.1 | SAMN02745168_0411 | SAMN02745168_1144 | Hypothetical protein. | Hypothetical protein. | 0.904 |
SMC35515.1 | SMC80749.1 | SAMN02745168_0411 | SAMN02745168_2598 | Hypothetical protein. | Glycosyltransferase involved in cell wall bisynthesis. | 0.917 |
SMC35515.1 | alaS | SAMN02745168_0411 | SAMN02745168_1096 | Hypothetical protein. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.930 |
SMC48258.1 | SMC35515.1 | SAMN02745168_1144 | SAMN02745168_0411 | Hypothetical protein. | Hypothetical protein. | 0.904 |
SMC48258.1 | SMC85688.1 | SAMN02745168_1144 | SAMN02745168_0057 | Hypothetical protein. | Protein of unknown function. | 0.925 |
SMC48258.1 | alaS | SAMN02745168_1144 | SAMN02745168_1096 | Hypothetical protein. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.941 |
SMC80749.1 | SMC35515.1 | SAMN02745168_2598 | SAMN02745168_0411 | Glycosyltransferase involved in cell wall bisynthesis. | Hypothetical protein. | 0.917 |
SMC80749.1 | SMC85688.1 | SAMN02745168_2598 | SAMN02745168_0057 | Glycosyltransferase involved in cell wall bisynthesis. | Protein of unknown function. | 0.929 |
SMC80749.1 | alaS | SAMN02745168_2598 | SAMN02745168_1096 | Glycosyltransferase involved in cell wall bisynthesis. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.948 |
SMC80749.1 | pheT | SAMN02745168_2598 | SAMN02745168_0932 | Glycosyltransferase involved in cell wall bisynthesis. | phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.443 |
SMC85688.1 | SMC48258.1 | SAMN02745168_0057 | SAMN02745168_1144 | Protein of unknown function. | Hypothetical protein. | 0.925 |
SMC85688.1 | SMC80749.1 | SAMN02745168_0057 | SAMN02745168_2598 | Protein of unknown function. | Glycosyltransferase involved in cell wall bisynthesis. | 0.929 |
SMC85688.1 | alaS | SAMN02745168_0057 | SAMN02745168_1096 | Protein of unknown function. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.930 |
SMC90852.1 | SMC92009.1 | SAMN02745168_0301 | SAMN02745168_0326 | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. | tRNA synthetases class I (M); Partial gene; manually curated. | 0.920 |
SMC90852.1 | alaS | SAMN02745168_0301 | SAMN02745168_1096 | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.833 |
SMC90852.1 | ileS | SAMN02745168_0301 | SAMN02745168_1517 | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. | Isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily. | 0.966 |
SMC90852.1 | leuS | SAMN02745168_0301 | SAMN02745168_0989 | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. | leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.990 |
SMC90852.1 | pheT | SAMN02745168_0301 | SAMN02745168_0932 | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. | phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.984 |
SMC90852.1 | valS | SAMN02745168_0301 | SAMN02745168_1085 | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. | valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. | 0.682 |
SMC92009.1 | SMC90852.1 | SAMN02745168_0326 | SAMN02745168_0301 | tRNA synthetases class I (M); Partial gene; manually curated. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.920 |
page 1 of 3