STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC49519.1AraC-type DNA-binding protein. (243 aa)    
Predicted Functional Partners:
SMC90076.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
     
 0.819
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.798
SMC49509.1
GyrI-like small molecule binding domain-containing protein.
       0.768
SMC34186.1
Helix-turn-helix domain-containing protein.
 
 
 0.700
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.538
SMC60669.1
Two component transcriptional regulator, LytTR family.
  
  
 0.527
SMC49496.1
tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA.
       0.524
SMC36349.1
Helix-turn-helix domain-containing protein.
  
 
 0.480
SMC82551.1
Helix-turn-helix domain-containing protein.
  
 
 0.480
SMC49487.1
Protein of unknown function.
       0.478
Your Current Organism:
Papillibacter cinnamivorans
NCBI taxonomy Id: 1122930
Other names: P. cinnamivorans DSM 12816, Papillibacter cinnamivorans DSM 12816
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.