STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC54296.1TRAP transporter, DctM subunit. (426 aa)    
Predicted Functional Partners:
SMC54282.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
 0.994
SMC54268.1
Extracellular solute-binding protein, family 7.
  
 0.951
SMC54306.1
4-hydroxy-2-oxoheptanedioate aldolase; Belongs to the HpcH/HpaI aldolase family.
       0.646
SMC54257.1
Hypothetical protein.
 
     0.597
SMC54316.1
Cupin domain-containing protein.
 
     0.592
SMC37921.1
Threonine dehydrogenase.
    
 0.505
SMC82771.1
Acyl-CoA synthetase (NDP forming).
  
 
  0.501
SMC85779.1
S-layer homology domain-containing protein.
   
 
  0.489
SMC87586.1
Serine protease Do.
   
 
  0.489
SMC50819.1
Hypothetical protein.
   
 
  0.489
Your Current Organism:
Papillibacter cinnamivorans
NCBI taxonomy Id: 1122930
Other names: P. cinnamivorans DSM 12816, Papillibacter cinnamivorans DSM 12816
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.