STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC56088.1Malate dehydrogenase (oxaloacetate-decarboxylating). (389 aa)    
Predicted Functional Partners:
SMC42617.1
Fumarate hydratase subunit beta.
 
 
 0.958
SMC87579.1
Phosphate acetyltransferase.
 
 
 0.951
SMC76586.1
Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.
   
 0.932
SMC90076.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 
 0.918
ldh
Malate dehydrogenase (NAD); Catalyzes the conversion of lactate to pyruvate.
  
 0.910
SMC54157.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
 0.890
SMC69793.1
4Fe-4S dicluster domain-containing protein.
    
 0.867
SMC55034.1
Fumarate hydratase subunit alpha.
  
 
 0.856
SMC64280.1
Dihydropyrimidine dehydrogenase (NAD+) subunit PreA.
  
 
 0.854
SMC72655.1
Acetolactate synthase, large subunit.
  
 
 0.847
Your Current Organism:
Papillibacter cinnamivorans
NCBI taxonomy Id: 1122930
Other names: P. cinnamivorans DSM 12816, Papillibacter cinnamivorans DSM 12816
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