STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC56639.1Predicted Zn-dependent peptidase; Belongs to the peptidase M16 family. (419 aa)    
Predicted Functional Partners:
SMC34197.1
Glycine/D-amino acid oxidase.
   
 0.972
SMC53763.1
4Fe-4S dicluster domain-containing protein.
  
 
 0.919
SMC69793.1
4Fe-4S dicluster domain-containing protein.
  
 
 0.884
SMC55538.1
NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein.
   
 
 0.881
SMC55567.1
NAD(P)-dependent iron-only hydrogenase diaphorase component iron-sulfur protein.
   
 
 0.875
SMC69814.1
Thioredoxin-like [2Fe-2S] ferredoxin.
   
 
 0.875
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 
 0.782
acpP-2
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
   
 
 0.782
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
 
 0.765
SMC40199.1
Tetratricopeptide repeat-containing protein.
   
 
 0.755
Your Current Organism:
Papillibacter cinnamivorans
NCBI taxonomy Id: 1122930
Other names: P. cinnamivorans DSM 12816, Papillibacter cinnamivorans DSM 12816
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.