STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC57646.1Uncharacterized protein YaaQ. (107 aa)    
Predicted Functional Partners:
SMC57634.1
Cell fate regulator YaaT, PSP1 superfamily (controls sporulation, competence, biofilm development).
  
    0.782
SMC57639.1
DNA polymerase-3 subunit delta'.
  
    0.767
SMC57624.1
Hypothetical protein.
       0.701
SMC57650.1
Arginine decarboxylase.
  
    0.618
SMC35296.1
Hypothetical protein.
  
    0.575
def
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
   
    0.514
SMC62225.1
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins; Belongs to the polypeptide deformylase family.
   
    0.514
SMC77451.1
Fur family transcriptional regulator, peroxide stress response regulator; Belongs to the Fur family.
   
    0.499
SMC72729.1
ECF transporter S component, folate family.
 
     0.470
SMC90615.1
c-di-AMP phosphodiesterase, consists of a GGDEF-like and DHH domains; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family.
  
  
 0.462
Your Current Organism:
Papillibacter cinnamivorans
NCBI taxonomy Id: 1122930
Other names: P. cinnamivorans DSM 12816, Papillibacter cinnamivorans DSM 12816
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.