STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC60797.1Site-specific recombinase XerD; Belongs to the 'phage' integrase family. (400 aa)    
Predicted Functional Partners:
SMC90076.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 
  0.764
SMC60809.1
DNA binding domain-containing protein, excisionase family.
       0.545
SMC62995.1
Flp pilus assembly protein CpaB.
  
     0.528
SMC62380.1
Hypothetical protein.
  
     0.521
SMC42019.1
comF family protein.
   
    0.513
SMC60858.1
Protein of unknown function.
 
  
 0.511
SMC62955.1
Hypothetical protein.
  
     0.510
SMC76259.1
Prephenate dehydrogenase.
  
    0.510
whiA
Hypothetical protein; Involved in cell division and chromosome segregation.
   
    0.501
SMC48367.1
Putative SOS response-associated peptidase YedK; Belongs to the SOS response-associated peptidase family.
   
    0.501
Your Current Organism:
Papillibacter cinnamivorans
NCBI taxonomy Id: 1122930
Other names: P. cinnamivorans DSM 12816, Papillibacter cinnamivorans DSM 12816
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.