STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC61303.1Protein of unknown function. (242 aa)    
Predicted Functional Partners:
SMC61336.1
Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain.
 
     0.965
SMC61378.1
PrgI family protein.
 
     0.953
SMC61211.1
DNA repair protein radc; Belongs to the UPF0758 family.
 
     0.950
SMC61354.1
Type IV secretory pathway, VirB4 component.
 
     0.949
SMC61280.1
DNA topoisomerase-3.
 
     0.942
SMC61401.1
Hypothetical protein.
 
     0.939
SMC61415.1
Maff2 family protein.
 
     0.931
SMC61186.1
Mobilisation protein (MobC).
 
     0.914
SMC61485.1
Protein of unknown function.
 
     0.902
SMC61471.1
Type IV secretion system protein VirD4.
 
     0.900
Your Current Organism:
Papillibacter cinnamivorans
NCBI taxonomy Id: 1122930
Other names: P. cinnamivorans DSM 12816, Papillibacter cinnamivorans DSM 12816
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