STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC62349.1Type IV secretion system protein VirD4. (608 aa)    
Predicted Functional Partners:
SMC62333.1
Hypothetical protein; Manually curated.
 
     0.949
SMC62403.1
Relaxase/Mobilisation nuclease domain-containing protein.
 
   
 0.945
SMC62380.1
Hypothetical protein.
 
    0.943
SMC62395.1
Protein of unknown function.
 
     0.943
SMC62324.1
Hypothetical protein.
 
     0.908
SMC62448.1
Toprim-like.
 
     0.892
SMC62484.1
Hypothetical protein.
 
    0.823
SMC62270.1
Type IV secretory pathway, VirB4 component.
 
  
 0.810
SMC62284.1
PrgI family protein.
 
  
 0.797
SMC61354.1
Type IV secretory pathway, VirB4 component.
 
  
 0.792
Your Current Organism:
Papillibacter cinnamivorans
NCBI taxonomy Id: 1122930
Other names: P. cinnamivorans DSM 12816, Papillibacter cinnamivorans DSM 12816
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