STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC62438.1Protein of unknown function. (348 aa)    
Predicted Functional Partners:
SMC62484.1
Hypothetical protein.
 
   
 0.936
SMC62448.1
Toprim-like.
 
     0.897
SMC62508.1
Hypothetical protein.
 
     0.866
SMC62430.1
Hypothetical protein.
       0.768
SMC62457.1
Hypothetical protein.
       0.741
SMC62471.1
Hypothetical protein.
       0.741
SMC62380.1
Hypothetical protein.
 
   
 0.731
SMC62349.1
Type IV secretion system protein VirD4.
 
     0.715
SMC62333.1
Hypothetical protein; Manually curated.
 
     0.712
SMC62395.1
Protein of unknown function.
 
     0.691
Your Current Organism:
Papillibacter cinnamivorans
NCBI taxonomy Id: 1122930
Other names: P. cinnamivorans DSM 12816, Papillibacter cinnamivorans DSM 12816
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.