STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC63633.1Hypothetical protein. (104 aa)    
Predicted Functional Partners:
SMC63616.1
4Fe-4S dicluster domain-containing protein.
       0.743
SMC71353.1
4Fe-4S dicluster domain-containing protein.
  
 
   0.695
SMC85803.1
Regulatory protein, gntR family.
 
    0.621
SMC63313.1
cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.
 
     0.593
SMC63585.1
cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.
 
     0.582
SMC69684.1
Transcriptional regulator, XRE family with cupin sensor.
  
 0.516
SMC83288.1
Transcriptional regulator, XRE family with cupin sensor.
  
 0.498
SMC34485.1
Hypothetical protein.
  
     0.469
SMC35744.1
Chemotaxis protein MotA.
    
   0.467
SMC63325.1
4Fe-4S binding domain-containing protein.
 
  
 0.445
Your Current Organism:
Papillibacter cinnamivorans
NCBI taxonomy Id: 1122930
Other names: P. cinnamivorans DSM 12816, Papillibacter cinnamivorans DSM 12816
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