STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC69784.1Stage II sporulation protein E (SpoIIE). (390 aa)    
Predicted Functional Partners:
SMC47698.1
Stage II sporulation protein AA (anti-sigma F factor antagonist); Belongs to the anti-sigma-factor antagonist family.
  
 0.975
SMC38022.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
  
 
 0.972
SMC69771.1
PAS domain S-box-containing protein.
 
     0.953
SMC69814.1
Thioredoxin-like [2Fe-2S] ferredoxin.
 
    0.925
SMC55607.1
Anti-sigma regulatory factor (Ser/Thr protein kinase).
 
 0.916
spoIIAB
Stage II sporulation protein AB (anti-sigma F factor); Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.
  
 0.894
SMC37204.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
  
 0.803
SMC35785.1
Flagellar motor switch protein FliM.
  
    0.793
SMC35600.1
Flagellar motor switch protein FliG.
  
    0.792
SMC69793.1
4Fe-4S dicluster domain-containing protein.
 
     0.784
Your Current Organism:
Papillibacter cinnamivorans
NCBI taxonomy Id: 1122930
Other names: P. cinnamivorans DSM 12816, Papillibacter cinnamivorans DSM 12816
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