STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC75074.1DNA repair exonuclease SbcCD nuclease subunit. (364 aa)    
Predicted Functional Partners:
SMC54538.1
Hypothetical protein.
  
 0.986
SMC62145.1
DNA sulfur modification protein DndD.
  
 0.986
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
 0.977
SMC75061.1
AAA domain-containing protein.
 
 
 0.963
SMC62068.1
ATP-dependent DNA helicase RecQ.
  
 0.948
SMC55793.1
Ankyrin repeat.
    
 0.920
recA
Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 0.889
SMC75051.1
Signal peptidase I; Belongs to the peptidase S26 family.
     
 0.781
SMC47412.1
Bifunctional non-homologous end joining protein LigD.
   
 0.716
SMC62035.1
ATP-dependent helicase HepA.
  
 
 0.714
Your Current Organism:
Papillibacter cinnamivorans
NCBI taxonomy Id: 1122930
Other names: P. cinnamivorans DSM 12816, Papillibacter cinnamivorans DSM 12816
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