Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SMC47412.1 | SMC54538.1 | SAMN02745168_1059 | SAMN02745168_1399 | Bifunctional non-homologous end joining protein LigD. | Hypothetical protein. | 0.701 |
SMC47412.1 | SMC62035.1 | SAMN02745168_1059 | SAMN02745168_1849 | Bifunctional non-homologous end joining protein LigD. | ATP-dependent helicase HepA. | 0.710 |
SMC47412.1 | SMC62145.1 | SAMN02745168_1059 | SAMN02745168_1856 | Bifunctional non-homologous end joining protein LigD. | DNA sulfur modification protein DndD. | 0.701 |
SMC47412.1 | SMC75051.1 | SAMN02745168_1059 | SAMN02745168_2301 | Bifunctional non-homologous end joining protein LigD. | Signal peptidase I; Belongs to the peptidase S26 family. | 0.587 |
SMC47412.1 | SMC75074.1 | SAMN02745168_1059 | SAMN02745168_2303 | Bifunctional non-homologous end joining protein LigD. | DNA repair exonuclease SbcCD nuclease subunit. | 0.716 |
SMC47412.1 | polA | SAMN02745168_1059 | SAMN02745168_1133 | Bifunctional non-homologous end joining protein LigD. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.977 |
SMC54538.1 | SMC47412.1 | SAMN02745168_1399 | SAMN02745168_1059 | Hypothetical protein. | Bifunctional non-homologous end joining protein LigD. | 0.701 |
SMC54538.1 | SMC55793.1 | SAMN02745168_1399 | SAMN02745168_1501 | Hypothetical protein. | Ankyrin repeat. | 0.615 |
SMC54538.1 | SMC62035.1 | SAMN02745168_1399 | SAMN02745168_1849 | Hypothetical protein. | ATP-dependent helicase HepA. | 0.459 |
SMC54538.1 | SMC62068.1 | SAMN02745168_1399 | SAMN02745168_1850 | Hypothetical protein. | ATP-dependent DNA helicase RecQ. | 0.885 |
SMC54538.1 | SMC75074.1 | SAMN02745168_1399 | SAMN02745168_2303 | Hypothetical protein. | DNA repair exonuclease SbcCD nuclease subunit. | 0.986 |
SMC54538.1 | polA | SAMN02745168_1399 | SAMN02745168_1133 | Hypothetical protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.903 |
SMC54538.1 | recA | SAMN02745168_1399 | SAMN02745168_1139 | Hypothetical protein. | Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.801 |
SMC55793.1 | SMC54538.1 | SAMN02745168_1501 | SAMN02745168_1399 | Ankyrin repeat. | Hypothetical protein. | 0.615 |
SMC55793.1 | SMC62035.1 | SAMN02745168_1501 | SAMN02745168_1849 | Ankyrin repeat. | ATP-dependent helicase HepA. | 0.836 |
SMC55793.1 | SMC62068.1 | SAMN02745168_1501 | SAMN02745168_1850 | Ankyrin repeat. | ATP-dependent DNA helicase RecQ. | 0.557 |
SMC55793.1 | SMC62145.1 | SAMN02745168_1501 | SAMN02745168_1856 | Ankyrin repeat. | DNA sulfur modification protein DndD. | 0.665 |
SMC55793.1 | SMC75074.1 | SAMN02745168_1501 | SAMN02745168_2303 | Ankyrin repeat. | DNA repair exonuclease SbcCD nuclease subunit. | 0.920 |
SMC55793.1 | polA | SAMN02745168_1501 | SAMN02745168_1133 | Ankyrin repeat. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.735 |
SMC55793.1 | recA | SAMN02745168_1501 | SAMN02745168_1139 | Ankyrin repeat. | Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.582 |
page 1 of 4