STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC78522.1GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex. (227 aa)    
Predicted Functional Partners:
SMC78480.1
Glycolate oxidase.
 
  
 0.757
SMC78491.1
Nickel-dependent lactate racemase.
 
     0.743
SMC46153.1
DNA-binding transcriptional regulator, GntR family.
 
  
 0.675
SMC47354.1
Phosphoglycolate phosphatase.
 
      0.605
SMC82551.1
Helix-turn-helix domain-containing protein.
 
  
 0.592
SMC36349.1
Helix-turn-helix domain-containing protein.
 
  
 0.557
SMC65470.1
FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomerase.
 
  
 0.516
SMC85803.1
Regulatory protein, gntR family.
   
  
 0.486
SMC54268.1
Extracellular solute-binding protein, family 7.
 
     0.484
SMC79348.1
DNA-binding transcriptional regulator, GntR family.
 
  
 0.484
Your Current Organism:
Papillibacter cinnamivorans
NCBI taxonomy Id: 1122930
Other names: P. cinnamivorans DSM 12816, Papillibacter cinnamivorans DSM 12816
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.