STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC81911.1Predicted arabinose efflux permease, MFS family. (446 aa)    
Predicted Functional Partners:
SMC81916.1
Hypothetical protein.
 
     0.655
SMC81906.1
Ubiquinone biosynthesis protein COQ7.
       0.594
SMC69718.1
DNA-binding transcriptional regulator, CsgD family.
  
   
 0.510
SMC81919.1
2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.
       0.504
aroK-2
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
  
 
 0.503
SMC76692.1
Chorismate mutase / prephenate dehydratase.
   
 
 0.470
SMC59819.1
Biotin-lipoyl like.
  
 
 0.459
SMC41351.1
5-methyltetrahydrofolate--homocysteine methyltransferase.
   
 
  0.449
SMC81921.1
Drug resistance transporter, EmrB/QacA subfamily; Belongs to the major facilitator superfamily.
       0.437
SMC42104.1
Homoserine dehydrogenase.
   
  0.411
Your Current Organism:
Papillibacter cinnamivorans
NCBI taxonomy Id: 1122930
Other names: P. cinnamivorans DSM 12816, Papillibacter cinnamivorans DSM 12816
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.