STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI36562.1Uncharacterized membrane protein. (179 aa)    
Predicted Functional Partners:
SHI49685.1
Energy-coupling factor transport system permease protein.
 
 0.909
SHI73317.1
Energy-coupling factor transport system permease protein.
  
 0.835
SHI36517.1
Pyridoxine kinase; Belongs to the pyridoxine kinase family.
       0.812
SHI36473.1
Radical SAM enzyme, TIGR04100 family.
       0.779
SHI32573.1
Cobalt/nickel transport system permease protein.
  
 0.775
SHI75888.1
Cobalt/nickel transport system permease protein.
  
 0.775
SHI36419.1
Septum formation protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
       0.732
ecfA-2
Energy-coupling factor transport system ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
 
 
 0.699
ecfA
Energy-coupling factor transport system ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
 
 
 0.691
SHI36612.1
TraX protein.
       0.625
Your Current Organism:
Parasporobacterium paucivorans
NCBI taxonomy Id: 1122934
Other names: P. paucivorans DSM 15970, Parasporobacterium paucivorans DSM 15970
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