STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI63831.1Ribose-phosphate pyrophosphokinase; Belongs to the ribose-phosphate pyrophosphokinase family. (395 aa)    
Predicted Functional Partners:
gcvH
Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.
     
 0.956
SHI65571.1
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
   
 
 0.895
SHJ04702.1
Transferase hexapeptide (six repeat-containing protein).
 
  
 0.881
SHI65995.1
2,4-dienoyl-CoA reductase.
   
 0.876
SHI81506.1
2,4-dienoyl-CoA reductase.
   
 0.876
SHJ11273.1
2,4-dienoyl-CoA reductase.
   
 0.876
SHI62935.1
Ribose 5-phosphate isomerase B.
    
 0.866
SHI63919.1
DnaD and phage-associated domain-containing protein.
 
     0.861
SHI98153.1
Phosphoribosylformylglycinamidine synthase.
  
  
 0.860
SHI62863.1
Protein-tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
 
  
 0.859
Your Current Organism:
Parasporobacterium paucivorans
NCBI taxonomy Id: 1122934
Other names: P. paucivorans DSM 15970, Parasporobacterium paucivorans DSM 15970
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