STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ22519.1DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. (245 aa)    
Predicted Functional Partners:
SHJ22548.1
Signal transduction histidine kinase.
  0.978
SHI64953.1
Signal transduction histidine kinase.
 0.935
SHJ05950.1
His Kinase A (phospho-acceptor) domain-containing protein.
  0.924
SHI67306.1
Signal transduction histidine kinase.
 
  0.907
SHJ60959.1
His Kinase A (phospho-acceptor) domain-containing protein.
 
  0.895
SHJ52482.1
His Kinase A (phospho-acceptor) domain-containing protein.
  0.892
SHI79400.1
HAMP domain-containing protein.
 
  0.887
SHJ14572.1
Signal transduction histidine kinase.
 
  0.877
SHJ39782.1
Signal transduction histidine kinase.
 
  0.876
SHI69209.1
Two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR.
  0.855
Your Current Organism:
Parasporobacterium paucivorans
NCBI taxonomy Id: 1122934
Other names: P. paucivorans DSM 15970, Parasporobacterium paucivorans DSM 15970
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