STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ33911.1Uncharacterized 2Fe-2 and 4Fe-4S clusters-containing protein, contains DUF4445 domain; Belongs to the uroporphyrinogen decarboxylase family. (854 aa)    
Predicted Functional Partners:
SHI32998.1
CO-methylating acetyl-CoA synthase corrinoid iron-sulfur protein large subunit precursor.
 
 
 0.871
SHI33038.1
acetyl-CoA decarbonylase/synthase delta subunit.
 
 
   0.869
SHJ33938.1
Pyrrolysine biosynthesis protein PylB.
       0.723
SHJ33815.1
Trimethylamine corrinoid protein.
 
    0.721
SHJ06829.1
methylmalonyl-CoA mutase C-terminal domain-containing protein/methyltransferase cognate corrinoid proteins.
 
    0.668
SHI53237.1
methylmalonyl-CoA mutase C-terminal domain-containing protein.
 
    0.664
SHJ33971.1
Pyrrolysine biosynthesis protein PylC.
       0.629
SHJ33999.1
Pyrrolysine biosynthesis protein PylD.
       0.616
SHJ34031.1
pyrrolysyl-tRNA synthetase, N-terminal region.
       0.616
SHJ34066.1
Pyrrolysyl-tRNA synthetase.
       0.603
Your Current Organism:
Parasporobacterium paucivorans
NCBI taxonomy Id: 1122934
Other names: P. paucivorans DSM 15970, Parasporobacterium paucivorans DSM 15970
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