STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ54833.1Hypothetical protein. (109 aa)    
Predicted Functional Partners:
SHJ54790.1
Hypothetical protein.
 
     0.519
SHI47453.1
Rubrerythrin.
  
     0.498
SHJ54421.1
Protein of unknown function.
 
     0.425
SHJ54750.1
Iron complex transport system substrate-binding protein.
       0.421
SHI99819.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
  
  
  0.412
SHJ54613.1
CxxC motif-containing protein.
     
 0.405
Your Current Organism:
Parasporobacterium paucivorans
NCBI taxonomy Id: 1122934
Other names: P. paucivorans DSM 15970, Parasporobacterium paucivorans DSM 15970
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.