Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SHI45664.1 | SHI63525.1 | SAMN02745691_00303 | SAMN02745691_00569 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Exodeoxyribonuclease-3. | 0.975 |
| SHI45664.1 | SHJ59202.1 | SAMN02745691_00303 | SAMN02745691_02213 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | A/G-specific DNA-adenine glycosylase; Adenine glycosylase active on G-A mispairs. | 0.542 |
| SHI45664.1 | ligA | SAMN02745691_00303 | SAMN02745691_02211 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA ligase (NAD+); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.551 |
| SHI45664.1 | polA | SAMN02745691_00303 | SAMN02745691_00082 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.999 |
| SHI63525.1 | SHI45664.1 | SAMN02745691_00569 | SAMN02745691_00303 | Exodeoxyribonuclease-3. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.975 |
| SHI63525.1 | SHJ59052.1 | SAMN02745691_00569 | SAMN02745691_02210 | Exodeoxyribonuclease-3. | 23S rRNA pseudouridine2604 synthase; Belongs to the pseudouridine synthase RsuA family. | 0.755 |
| SHI63525.1 | SHJ59202.1 | SAMN02745691_00569 | SAMN02745691_02213 | Exodeoxyribonuclease-3. | A/G-specific DNA-adenine glycosylase; Adenine glycosylase active on G-A mispairs. | 0.964 |
| SHI63525.1 | nth | SAMN02745691_00569 | SAMN02745691_00593 | Exodeoxyribonuclease-3. | DNA-(apurinic or apyrimidinic site) lyase; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.998 |
| SHI63525.1 | polA | SAMN02745691_00569 | SAMN02745691_00082 | Exodeoxyribonuclease-3. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.988 |
| SHJ59052.1 | SHI63525.1 | SAMN02745691_02210 | SAMN02745691_00569 | 23S rRNA pseudouridine2604 synthase; Belongs to the pseudouridine synthase RsuA family. | Exodeoxyribonuclease-3. | 0.755 |
| SHJ59052.1 | SHJ59156.1 | SAMN02745691_02210 | SAMN02745691_02212 | 23S rRNA pseudouridine2604 synthase; Belongs to the pseudouridine synthase RsuA family. | Protein of unknown function. | 0.529 |
| SHJ59052.1 | SHJ59202.1 | SAMN02745691_02210 | SAMN02745691_02213 | 23S rRNA pseudouridine2604 synthase; Belongs to the pseudouridine synthase RsuA family. | A/G-specific DNA-adenine glycosylase; Adenine glycosylase active on G-A mispairs. | 0.495 |
| SHJ59052.1 | ligA | SAMN02745691_02210 | SAMN02745691_02211 | 23S rRNA pseudouridine2604 synthase; Belongs to the pseudouridine synthase RsuA family. | DNA ligase (NAD+); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.802 |
| SHJ59156.1 | SHJ59052.1 | SAMN02745691_02212 | SAMN02745691_02210 | Protein of unknown function. | 23S rRNA pseudouridine2604 synthase; Belongs to the pseudouridine synthase RsuA family. | 0.529 |
| SHJ59156.1 | SHJ59202.1 | SAMN02745691_02212 | SAMN02745691_02213 | Protein of unknown function. | A/G-specific DNA-adenine glycosylase; Adenine glycosylase active on G-A mispairs. | 0.762 |
| SHJ59156.1 | ligA | SAMN02745691_02212 | SAMN02745691_02211 | Protein of unknown function. | DNA ligase (NAD+); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.789 |
| SHJ59202.1 | SHI45664.1 | SAMN02745691_02213 | SAMN02745691_00303 | A/G-specific DNA-adenine glycosylase; Adenine glycosylase active on G-A mispairs. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.542 |
| SHJ59202.1 | SHI63525.1 | SAMN02745691_02213 | SAMN02745691_00569 | A/G-specific DNA-adenine glycosylase; Adenine glycosylase active on G-A mispairs. | Exodeoxyribonuclease-3. | 0.964 |
| SHJ59202.1 | SHJ59052.1 | SAMN02745691_02213 | SAMN02745691_02210 | A/G-specific DNA-adenine glycosylase; Adenine glycosylase active on G-A mispairs. | 23S rRNA pseudouridine2604 synthase; Belongs to the pseudouridine synthase RsuA family. | 0.495 |
| SHJ59202.1 | SHJ59156.1 | SAMN02745691_02213 | SAMN02745691_02212 | A/G-specific DNA-adenine glycosylase; Adenine glycosylase active on G-A mispairs. | Protein of unknown function. | 0.762 |
page 1 of 3