SHJ68013.1 protein (Parasporobacterium paucivorans)

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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protein homology

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Score

SHJ68013.1

Branched-chain amino acid transport system substrate-binding protein. (424 aa)

Predicted Functional Partners:

SHJ68050.1

0.953

SHI80404.1

0.929

SHI80445.1

0.923

SHI29602.1

0.922

SHJ70358.1

0.922

SHI80328.1

0.906

SHI91437.1

0.904

SHJ14785.1

0.887

SHJ14744.1

0.886

SHJ14659.1

0.844

Your Current Organism:

Parasporobacterium paucivorans

NCBI taxonomy Id: 1122934
Other names: P. paucivorans DSM 15970, Parasporobacterium paucivorans DSM 15970

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SHI29602.1	SHI80328.1	SAMN02745691_00001	SAMN02745691_00854	Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family.	Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family.	0.885
SHI29602.1	SHI80404.1	SAMN02745691_00001	SAMN02745691_00856	Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family.	Branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.935
SHI29602.1	SHI91437.1	SAMN02745691_00001	SAMN02745691_01023	Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family.	Branched-chain amino acid transport system ATP-binding protein.	0.894
SHI29602.1	SHJ14659.1	SAMN02745691_00001	SAMN02745691_01421	Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family.	Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family.	0.916
SHI29602.1	SHJ14744.1	SAMN02745691_00001	SAMN02745691_01423	Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family.	Branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.935
SHI29602.1	SHJ14785.1	SAMN02745691_00001	SAMN02745691_01424	Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family.	Branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.775
SHI29602.1	SHJ68013.1	SAMN02745691_00001	SAMN02745691_02362	Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family.	Branched-chain amino acid transport system substrate-binding protein.	0.922
SHI29602.1	SHJ68050.1	SAMN02745691_00001	SAMN02745691_02363	Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family.	Branched-chain amino acid transport system ATP-binding protein.	0.901
SHI80328.1	SHI29602.1	SAMN02745691_00854	SAMN02745691_00001	Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family.	Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family.	0.885
SHI80328.1	SHI80404.1	SAMN02745691_00854	SAMN02745691_00856	Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family.	Branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.974
SHI80328.1	SHI80445.1	SAMN02745691_00854	SAMN02745691_00857	Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family.	Branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.996
SHI80328.1	SHJ14744.1	SAMN02745691_00854	SAMN02745691_01423	Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family.	Branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.814
SHI80328.1	SHJ14785.1	SAMN02745691_00854	SAMN02745691_01424	Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family.	Branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.800
SHI80328.1	SHJ68013.1	SAMN02745691_00854	SAMN02745691_02362	Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family.	Branched-chain amino acid transport system substrate-binding protein.	0.906
SHI80328.1	SHJ70358.1	SAMN02745691_00854	SAMN02745691_02392	Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family.	Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family.	0.886
SHI80404.1	SHI29602.1	SAMN02745691_00856	SAMN02745691_00001	Branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family.	0.935
SHI80404.1	SHI80328.1	SAMN02745691_00856	SAMN02745691_00854	Branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family.	0.974
SHI80404.1	SHI80445.1	SAMN02745691_00856	SAMN02745691_00857	Branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	Branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.989
SHI80404.1	SHI91437.1	SAMN02745691_00856	SAMN02745691_01023	Branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	Branched-chain amino acid transport system ATP-binding protein.	0.921
SHI80404.1	SHJ14659.1	SAMN02745691_00856	SAMN02745691_01421	Branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family.	0.940

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Network Stats

number of nodes:

11

number of edges:

23

average node degree:

4.18

avg. local clustering coefficient:

0.896

expected number of edges:

10

PPI enrichment p-value:

0.000465

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006418

tRNA aminoacylation for protein translation

10 of 23

2.15

6.76

1.43e-17

GO:0006520

Cellular amino acid metabolic process

11 of 151

1.37

2.55

3.12e-13

GO:0044271

Cellular nitrogen compound biosynthetic process

11 of 337

1.02

1.34

4.97e-10

GO:1901566

Organonitrogen compound biosynthetic process

11 of 394

0.96

1.17

2.29e-09

GO:0006139

Nucleobase-containing compound metabolic process

11 of 479

0.87

0.98

1.74e-08

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0004812

aminoacyl-tRNA ligase activity

10 of 23

2.15

6.83

7.78e-18

GO:0016874

Ligase activity

11 of 89

1.6

3.75

1.12e-15

GO:0002161

aminoacyl-tRNA editing activity

3 of 7

2.14

2.08

8.04e-05

GO:0000049

tRNA binding

4 of 28

1.67

1.83

5.45e-05

GO:0005524

ATP binding

11 of 311

1.06

1.43

3.21e-10

(more ...)

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005737

Cytoplasm

11 of 1203

0.47

0.39

0.00095

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:348

Aminoacyl-tRNA synthetase

5 of 15

2.03

2.81

1.17e-06

CL:350

Aminoacyl-tRNA synthetase

3 of 10

1.99

1.53

0.00094

CL:110

Translation, and Protein export

6 of 137

1.15

1.03

0.00059

CL:355

tRNA synthetases class I (M), and arginyl-tRNA aminoacylation

2 of 5

2.11

0.93

0.0182

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00970

Aminoacyl-tRNA biosynthesis

10 of 31

2.02

6.14

1.69e-17

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005737

Cytoplasm

11 of 1008

0.55

0.46

0.00029

GOCC:0005829

Cytosol

8 of 622

0.62

0.44

0.0089

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0030

Aminoacyl-tRNA synthetase

10 of 22

2.17

7.11

1.71e-18

KW-0648

Protein biosynthesis

10 of 49

1.82

4.85

5.53e-16

KW-0436

Ligase

11 of 69

1.71

4.49

3.92e-17

KW-0067

ATP-binding

11 of 252

1.15

1.72

1.58e-11

KW-0820

tRNA-binding

3 of 19

1.71

1.39

0.0011

(more ...)

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF13603

Leucyl-tRNA synthetase, Domain 2

3 of 3

2.51

1.94

0.00025

PF08264

Anticodon-binding domain of tRNA ligase

3 of 3

2.51

1.94

0.00025

PF09334

tRNA synthetases class I (M)

3 of 4

2.39

1.92

0.00025

PF00587

tRNA synthetase class II core domain (G, H, P, S and T)

2 of 3

2.33

1.04

0.0122

Protein Domains (SMART)

domain

description

count in network

strength

signal

false discovery rate

SM00863

Threonyl and Alanyl tRNA synthetase second additional domain

2 of 2

2.51

1.18

0.0070

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