STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fieFFerrous-iron efflux pump FieF; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family. (307 aa)    
Predicted Functional Partners:
KHJ38440.1
Mutator mutT protein.
  
    0.842
bioA
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.841
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
  
    0.836
KHJ38442.1
Hypothetical protein.
       0.777
KHJ38438.1
Aspartate aminotransferase.
       0.703
Your Current Organism:
Pedobacter glucosidilyticus
NCBI taxonomy Id: 1122941
Other names: CCTCC AB 206110, DSM 23534, KCTC 22438, P. glucosidilyticus, Pedobacter glucosidilyticus Luo et al. 2010 emend. Hahnke et al. 2016, Pedobacter glucosidilyticus Luo et al. 2010 emend. Zhou et al. 2012, Pedobacter sp. DD6b, strain 1-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.