STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000422965_01679Unannotated protein. (357 aa)    
Predicted Functional Partners:
GCA_000422965_01385
Unannotated protein.
 
   
 
0.938
GCA_000422965_01467
Unannotated protein.
 
   
 0.931
GCA_000422965_01680
Unannotated protein.
 
  0.928
GCA_000422965_00691
Unannotated protein.
 
   
 
0.919
GCA_000422965_01681
Unannotated protein.
  
  0.915
GCA_000422965_00422
Unannotated protein.
 
  0.912
GCA_000422965_04535
Unannotated protein.
 
  0.909
GCA_000422965_04042
Unannotated protein.
 
  0.907
GCA_000422965_00834
Unannotated protein.
   
  0.906
GCA_000422965_02159
Unannotated protein.
  0.902
Your Current Organism:
Pleomorphomonas oryzae
NCBI taxonomy Id: 1122963
Other names: P. oryzae DSM 16300, Pleomorphomonas oryzae DSM 16300
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.