STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000422965_02607Unannotated protein. (626 aa)    
Predicted Functional Partners:
GCA_000422965_02608
Unannotated protein.
 0.999
GCA_000422965_02606
Unannotated protein.
  
  
 0.984
GCA_000422965_03167
Unannotated protein.
   
 
  0.885
GCA_000422965_03304
Unannotated protein.
    
  0.882
GCA_000422965_04261
Unannotated protein.
    
  0.882
GCA_000422965_04460
Unannotated protein.
    
  0.879
GCA_000422965_04618
Unannotated protein.
    
  0.879
GCA_000422965_00897
Unannotated protein.
  
  
 0.878
GCA_000422965_00298
Unannotated protein.
    
  0.861
GCA_000422965_03784
Unannotated protein.
    
  0.861
Your Current Organism:
Pleomorphomonas oryzae
NCBI taxonomy Id: 1122963
Other names: P. oryzae DSM 16300, Pleomorphomonas oryzae DSM 16300
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.