STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000422965_03190Unannotated protein. (275 aa)    
Predicted Functional Partners:
GCA_000422965_04238
Unannotated protein.
 
  
 0.856
GCA_000422965_00755
Unannotated protein.
    
 0.838
GCA_000422965_00295
Unannotated protein.
    
 0.837
GCA_000422965_04191
Unannotated protein.
    
  0.830
GCA_000422965_04076
Unannotated protein.
    
  0.791
GCA_000422965_03307
Unannotated protein.
 
  
  0.769
GCA_000422965_00315
Unannotated protein.
    
  0.758
GCA_000422965_03953
Unannotated protein.
    
  0.758
GCA_000422965_03993
Unannotated protein.
    
  0.758
GCA_000422965_04321
Unannotated protein.
    
  0.758
Your Current Organism:
Pleomorphomonas oryzae
NCBI taxonomy Id: 1122963
Other names: P. oryzae DSM 16300, Pleomorphomonas oryzae DSM 16300
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.