STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000422965_04613Unannotated protein. (242 aa)    
Predicted Functional Partners:
GCA_000422965_03169
Unannotated protein.
   
  0.966
GCA_000422965_00003
Unannotated protein.
   
 0.965
GCA_000422965_03178
Unannotated protein.
   
  0.964
GCA_000422965_03173
Unannotated protein.
   
 0.963
GCA_000422965_03176
Unannotated protein.
   
 0.962
GCA_000422965_03183
Unannotated protein.
   
 0.962
GCA_000422965_03160
Unannotated protein.
   
  0.959
GCA_000422965_03165
Unannotated protein.
   
 0.959
GCA_000422965_03168
Unannotated protein.
   
 0.959
GCA_000422965_00002
Unannotated protein.
   
 0.958
Your Current Organism:
Pleomorphomonas oryzae
NCBI taxonomy Id: 1122963
Other names: P. oryzae DSM 16300, Pleomorphomonas oryzae DSM 16300
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.