STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SME94471.1Outer membrane protein (porin). (376 aa)    
Predicted Functional Partners:
SMF55889.1
Phospholipid-binding lipoprotein MlaA.
    
 
 0.759
SMF37385.1
Sulfur-oxidizing protein SoxY.
  
     0.632
SMF37362.1
Cytochrome c-550 PedF.
  
    0.626
SMF37172.1
Alcohol dehydrogenase (cytochrome c).
 
    0.594
SMF37396.1
Quinoprotein relay system zinc metallohydrolase 1.
  
     0.584
SMF26936.1
Cytochrome c, mono-and diheme variants.
  
 
 0.529
tolB
TolB protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
    
 
 0.497
SMF28740.1
Pyrroloquinoline quinone biosynthesis protein D.
  
     0.486
SMF37375.1
Amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-); Belongs to the bacterial solute-binding protein 3 family.
  
     0.450
SMF49192.1
Membrane protein DedA, SNARE-associated domain.
  
     0.402
Your Current Organism:
Pseudogulbenkiania subflava
NCBI taxonomy Id: 1123014
Other names: P. subflava DSM 22618, Pseudogulbenkiania subflava BP-5, Pseudogulbenkiania subflava DSM 22618, beta proteobacterium KMU-BP-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.