STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF09630.1Ornithine cyclodeaminase. (337 aa)    
Predicted Functional Partners:
SMF09628.1
Cysteine synthase A.
 
 0.986
SMF09639.1
Non-ribosomal peptide synthetase terminal domain of unknown function.
 
   
 0.901
SMF09673.1
Amino acid adenylation domain-containing protein.
 
     0.897
SMF08691.1
L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
  
 
 0.884
SME91963.1
Ornithine cyclodeaminase.
  
  
  0.754
SMF09685.1
Taurine dioxygenase, alpha-ketoglutarate-dependent.
 
    0.720
SMF31245.1
Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.
 
 
 0.667
SMF10218.1
Siderophore synthetase component.
  
 
 0.621
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
   
 
 0.613
SMF15609.1
Proline racemase.
 
  
 0.595
Your Current Organism:
Pseudogulbenkiania subflava
NCBI taxonomy Id: 1123014
Other names: P. subflava DSM 22618, Pseudogulbenkiania subflava BP-5, Pseudogulbenkiania subflava DSM 22618, beta proteobacterium KMU-BP-5
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.