STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF17043.1Predicted arabinose efflux permease, MFS family. (376 aa)    
Predicted Functional Partners:
SMF38372.1
Transcriptional regulator.
  
     0.694
SMF55743.1
Major Facilitator Superfamily protein.
  
     0.679
SMF17030.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
    
  0.664
SMF17057.1
Nucleoside-diphosphate-sugar epimerase.
       0.661
SMF17071.1
2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase.
       0.627
SMF17087.1
3-amino-4-hydroxybenzoic acid synthase.
       0.627
SME94650.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
  0.488
SMF49645.1
Chorismate mutase.
   
 
 0.483
SMF02670.1
MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein.
  
    0.476
SMF38735.1
Quaternary ammonium compound-resistance protein SugE.
  
   
 0.476
Your Current Organism:
Pseudogulbenkiania subflava
NCBI taxonomy Id: 1123014
Other names: P. subflava DSM 22618, Pseudogulbenkiania subflava BP-5, Pseudogulbenkiania subflava DSM 22618, beta proteobacterium KMU-BP-5
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