STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF20824.1Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. (107 aa)    
Predicted Functional Partners:
SME97072.1
Isocitrate dehydrogenase; Belongs to the monomeric-type IDH family.
  
 
 0.955
mdh
Malate dehydrogenase (NAD); Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.
  
 
 0.948
SMF56725.1
Indolepyruvate ferredoxin oxidoreductase.
  
 
 0.920
SMF00695.1
Glutamate synthase (NADPH/NADH) large chain.
    
  0.906
SME92410.1
2,4-dienoyl-CoA reductase.
  
 0.744
SMF18041.1
Phosphotransacetylase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
    
 0.735
SMF00690.1
Glutamate synthase (NADPH) small subunit.
  
 0.725
SMF23506.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
    
 0.718
SMF32908.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
    
 0.718
SMF47868.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
    
 0.718
Your Current Organism:
Pseudogulbenkiania subflava
NCBI taxonomy Id: 1123014
Other names: P. subflava DSM 22618, Pseudogulbenkiania subflava BP-5, Pseudogulbenkiania subflava DSM 22618, beta proteobacterium KMU-BP-5
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