STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF20862.1Hypothetical protein. (296 aa)    
Predicted Functional Partners:
SMF20869.1
LemA protein.
 
    0.940
SMF42019.1
Type IV pilus assembly protein PilY1.
  
     0.557
SMF20877.1
Predicted oxidoreductase, contains short-chain dehydrogenase (SDR) and DUF2520 domains.
       0.549
SMF56557.1
TniQ protein.
  
     0.543
SMF02193.1
Type IV pilus assembly protein PilP.
  
     0.534
SMF02165.1
Type IV pilus assembly protein PilO.
  
     0.526
SME91328.1
Protein of unknown function.
  
     0.499
SMF46962.1
Hypothetical protein.
  
     0.484
SMF02155.1
Type IV pilus assembly protein PilN.
  
     0.480
SMF02802.1
Type IV pilus assembly protein PilV.
  
     0.478
Your Current Organism:
Pseudogulbenkiania subflava
NCBI taxonomy Id: 1123014
Other names: P. subflava DSM 22618, Pseudogulbenkiania subflava BP-5, Pseudogulbenkiania subflava DSM 22618, beta proteobacterium KMU-BP-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.