STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF41212.1Response regulator c-di-GMP phosphodiesterase, RpfG family, contains REC and HD-GYP domains. (532 aa)    
Predicted Functional Partners:
SMF58448.1
Sensor domain CHASE3-containing protein.
  
 0.983
SMF29715.1
PAS domain S-box-containing protein.
 0.970
SMF00948.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 0.966
SMF41201.1
His Kinase A (phospho-acceptor) domain-containing protein.
 
 0.966
SMF58453.1
EAL domain-containing protein.
  
 0.937
SMF01077.1
PAS domain S-box-containing protein.
 
 0.936
SMF16888.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 0.933
SMF54746.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 0.928
SMF53090.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 0.925
SME99631.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 0.919
Your Current Organism:
Pseudogulbenkiania subflava
NCBI taxonomy Id: 1123014
Other names: P. subflava DSM 22618, Pseudogulbenkiania subflava BP-5, Pseudogulbenkiania subflava DSM 22618, beta proteobacterium KMU-BP-5
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