STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000620785_03521Unannotated protein. (139 aa)    
Predicted Functional Partners:
GCA_000620785_03520
Unannotated protein.
 
     0.617
GCA_000620785_03518
Unannotated protein.
    
  0.599
GCA_000620785_01783
Unannotated protein.
  
     0.569
GCA_000620785_03519
Unannotated protein.
       0.554
GCA_000620785_07224
Unannotated protein.
  
     0.543
GCA_000620785_07216
Unannotated protein.
  
     0.538
GCA_000620785_05945
Unannotated protein.
  
     0.524
GCA_000620785_09431
Unannotated protein.
  
     0.521
GCA_000620785_07141
Unannotated protein.
  
     0.510
GCA_000620785_08850
Unannotated protein.
 
     0.506
Your Current Organism:
Pseudonocardia acaciae
NCBI taxonomy Id: 1123023
Other names: P. acaciae DSM 45401, Pseudonocardia acaciae DSM 45401, Pseudonocardia acaciae GMKU095
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.