STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO60121.1Signal peptide peptidase SppA. (281 aa)    
Predicted Functional Partners:
SHO60124.1
Hypothetical protein.
       0.574
SHO60117.1
Cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein.
       0.498
SHO60119.1
Cytochrome bd-I ubiquinol oxidase subunit 2 apoprotein.
       0.498
SHO59661.1
Putative signal transducing protein.
 
     0.462
SHO66145.1
TPR repeat-containing protein.
  
  
 0.424
Your Current Organism:
Pseudoxanthobacter soli
NCBI taxonomy Id: 1123029
Other names: P. soli DSM 19599, Pseudoxanthobacter soli DSM 19599
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.