STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO60773.1MFS transporter, SHS family, lactate transporter. (427 aa)    
Predicted Functional Partners:
SHO61456.1
Thioredoxin reductase (NADPH).
 
     0.505
SHO65432.1
Asparagine:proton symporter, AAT family.
  
   
 0.501
glyQ
glycyl-tRNA synthetase alpha chain.
       0.474
SHO65882.1
High-affinity nickel-transport protein; Belongs to the NiCoT transporter (TC 2.A.52) family.
  
     0.402
Your Current Organism:
Pseudoxanthobacter soli
NCBI taxonomy Id: 1123029
Other names: P. soli DSM 19599, Pseudoxanthobacter soli DSM 19599
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