STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO61204.1Type IV secretion system protein VirB4. (812 aa)    
Predicted Functional Partners:
SHO61206.1
Type IV secretion system protein VirB2.
 
 0.997
SHO61203.1
P-type conjugative transfer protein TrbJ.
  
 0.996
SHO61197.1
Type IV secretion system protein VirB10.
 
 
 0.993
SHO61198.1
Type IV secretion system protein VirB9.
 
 
 0.990
SHO61200.1
Type IV secretion system protein VirB5.
 
  
 0.990
SHO61201.1
Type IV secretion system protein TrbL.
 
  
 0.989
SHO61207.1
Type IV secretion system protein VirB11.
 
  
 0.989
SHO61205.1
Type IV secretion system protein VirB3.
 
  
 0.988
SHO61202.1
Conjugative transfer region protein TrbK.
 
     0.935
SHO61225.1
Type IV secretion system protein VirD4.
  
 0.881
Your Current Organism:
Pseudoxanthobacter soli
NCBI taxonomy Id: 1123029
Other names: P. soli DSM 19599, Pseudoxanthobacter soli DSM 19599
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.