STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO61593.1DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. (222 aa)    
Predicted Functional Partners:
SHO66439.1
PAS domain S-box-containing protein.
  
 0.993
SHO63020.1
Na+/proline symporter.
  
 0.990
SHO67053.1
Two-component system, cell cycle sensor histidine kinase and response regulator CckA.
  
 0.985
SHO66252.1
Two-component system, cell cycle sensor histidine kinase PleC.
 
 0.868
SHO62648.1
PAS domain S-box-containing protein.
 
 0.863
SHO63188.1
Two-component system, chemotaxis family, sensor kinase CheA.
  
 0.847
SHO65516.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.839
SHO67543.1
Signal transduction histidine kinase.
 
 0.792
SHO66641.1
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
   
 0.779
SHO63220.1
Flagellar hook-associated protein 3 FlgL; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
 
    0.774
Your Current Organism:
Pseudoxanthobacter soli
NCBI taxonomy Id: 1123029
Other names: P. soli DSM 19599, Pseudoxanthobacter soli DSM 19599
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