STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO63584.1acyl-CoA thioesterase-2. (289 aa)    
Predicted Functional Partners:
SHO64634.1
NAD+ diphosphatase.
  
   
 0.544
SHO63585.1
2-octaprenyl-6-methoxyphenol hydroxylase.
       0.524
SHO65515.1
Acyl dehydratase.
   
 
 0.509
SHO65762.1
Acyl dehydratase.
   
 
 0.509
SHO66541.1
Acyl dehydratase.
   
 
 0.509
SHO63586.1
Hypoxia induced protein conserved region.
 
     0.502
leuA-2
2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily.
 
 
  
 0.454
SHO63583.1
Nitrogen regulatory protein P-II family; Belongs to the P(II) protein family.
       0.445
Your Current Organism:
Pseudoxanthobacter soli
NCBI taxonomy Id: 1123029
Other names: P. soli DSM 19599, Pseudoxanthobacter soli DSM 19599
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